These LAMMPS scripts were used to carry out the calculations for the manuscript Alessio Alexiadis, Andrea Albano, Amin Rahmat, Mehmet Yildiz, Adnan Kefal, Murat Ă–zbulut, Nadi Bakirci, Diego Alexander Garzon Alvarado, Carlos Alberto Duque-Daza, Javier Hernando Eslava Schmalbach Simulation of Pandemics in Real-cities: Enhanced and Accurate Digital-labs